NVBIO
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Groups Pages
Public Methods | List of all members
cufmi::bowtie2::cuda::ReadHitsIndexDeviceView::HitArray Struct Reference

Detailed description

An auxiliary class to represent the hit array bound to a given read

Definition at line 74 of file proposal.h.

#include <proposal.h>

Public Methods

CUFMI_FORCEINLINE CUFMI_HOST_DEVICE HitArray (const ReadHitsIndexDeviceView &index, const uint32 read_index)
 
CUFMI_FORCEINLINE
CUFMI_HOST_DEVICE uint32 
size () const
 
CUFMI_FORCEINLINE
CUFMI_HOST_DEVICE uint32 
operator[] (const uint32 slot) const
 

Constructor & Destructor Documentation

CUFMI_FORCEINLINE CUFMI_HOST_DEVICE cufmi::bowtie2::cuda::ReadHitsIndexDeviceView::HitArray::HitArray ( const ReadHitsIndexDeviceView index,
const uint32  read_index 
)
inline

constructor

Definition at line 79 of file proposal.h.

Member Function Documentation

CUFMI_FORCEINLINE CUFMI_HOST_DEVICE uint32 cufmi::bowtie2::cuda::ReadHitsIndexDeviceView::HitArray::operator[] ( const uint32  slot) const
inline

return the i-th hit link

Definition at line 89 of file proposal.h.

CUFMI_FORCEINLINE CUFMI_HOST_DEVICE uint32 cufmi::bowtie2::cuda::ReadHitsIndexDeviceView::HitArray::size ( void  ) const
inline

return the number of hits

Definition at line 84 of file proposal.h.


The documentation for this struct was generated from the following file: