NVBIO
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Represent a set of infixes of a string-set
SequenceType | the string or string-set type |
InfixIterator | the infix iterator type - value_type can be uint4 or uint64_4 |
#include <infix.h>
Public Types | |
typedef SequenceType | sequence_type |
typedef InfixIterator | infix_iterator |
typedef sequence_type::string_type | base_string_type |
typedef std::iterator_traits < InfixIterator >::value_type | coord_type |
typedef Infix < base_string_type, coord_type > | string_type |
Public Methods | |
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE | InfixSetCore () |
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE | InfixSetCore (const uint32 size, const sequence_type sequence, const infix_iterator infixes) |
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32 | size () const |
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE string_type | operator[] (const uint32 i) const |
Public Members | |
uint32 | m_size |
sequence_type | m_sequence |
infix_iterator | m_infixes |
typedef sequence_type::string_type nvbio::InfixSetCore< SequenceType, InfixIterator, 4u >::base_string_type |
typedef std::iterator_traits<InfixIterator>::value_type nvbio::InfixSetCore< SequenceType, InfixIterator, 4u >::coord_type |
typedef InfixIterator nvbio::InfixSetCore< SequenceType, InfixIterator, 4u >::infix_iterator |
typedef SequenceType nvbio::InfixSetCore< SequenceType, InfixIterator, 4u >::sequence_type |
typedef Infix<base_string_type, coord_type> nvbio::InfixSetCore< SequenceType, InfixIterator, 4u >::string_type |
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infix_iterator nvbio::InfixSetCore< SequenceType, InfixIterator, 4u >::m_infixes |
sequence_type nvbio::InfixSetCore< SequenceType, InfixIterator, 4u >::m_sequence |
uint32 nvbio::InfixSetCore< SequenceType, InfixIterator, 4u >::m_size |