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nvbio::MEMFilter< host_tag, fm_index_type > Member List

This is the complete list of members for nvbio::MEMFilter< host_tag, fm_index_type >, including all inherited members.

coord_dimnvbio::MEMFilter< host_tag, fm_index_type >static
coord_type typedefnvbio::MEMFilter< host_tag, fm_index_type >
first_hit(const uint32 string_id) const nvbio::MEMFilter< host_tag, fm_index_type >
hit_type typedefnvbio::MEMFilter< host_tag, fm_index_type >
index_type typedefnvbio::MEMFilter< host_tag, fm_index_type >
locate(const uint64 begin, const uint64 end, mems_iterator mems)nvbio::MEMFilter< host_tag, fm_index_type >
m_f_indexnvbio::MEMFilter< host_tag, fm_index_type >
m_mem_rangesnvbio::MEMFilter< host_tag, fm_index_type >
m_n_occurrencesnvbio::MEMFilter< host_tag, fm_index_type >
m_n_queriesnvbio::MEMFilter< host_tag, fm_index_type >
m_r_indexnvbio::MEMFilter< host_tag, fm_index_type >
m_slotsnvbio::MEMFilter< host_tag, fm_index_type >
mem_type typedefnvbio::MEMFilter< host_tag, fm_index_type >
n_hits() const nvbio::MEMFilter< host_tag, fm_index_type >inline
n_mems() const nvbio::MEMFilter< host_tag, fm_index_type >inline
n_ranges() const nvbio::MEMFilter< host_tag, fm_index_type >inline
rank(const fm_index_type &f_index, const fm_index_type &r_index, const string_set_type &string_set, const uint32 min_intv=1u, const uint32 max_intv=uint32(-1), const uint32 min_span=1u, const uint32 split_len=uint32(-1), const uint32 split_width=uint32(-1))nvbio::MEMFilter< host_tag, fm_index_type >
rank_type typedefnvbio::MEMFilter< host_tag, fm_index_type >
system_tag typedefnvbio::MEMFilter< host_tag, fm_index_type >