nvbio::PrefixCore< StringType, CoordType, 1u > Struct Template Reference

Detailed description

template< typename StringType, typename CoordType>
struct nvbio::PrefixCore< StringType, CoordType, 1u >

A class to represent a string prefix, i.e. an arbitrarily placed substring

Template Parameters

StringType	the underlying string type
CoordType	the type of prefix coordinates, uint32|uint64

Definition at line 80 of file prefix.h.

#include <prefix.h>

Public Types
typedef StringType	string_type
typedef CoordType	coord_type
typedef vector_traits < CoordType >::value_type	index_type
typedef std::iterator_traits < string_type >::value_type	symbol_type
typedef std::iterator_traits < string_type >::value_type	value_type
typedef std::iterator_traits < string_type >::reference	reference
typedef string_traits < StringType >::iterator	iterator
typedef string_traits < StringType >::const_iterator	const_iterator
typedef string_traits < StringType > ::forward_iterator	forward_iterator

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	PrefixCore ()
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	PrefixCore (const string_type string, const coord_type prefix)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32	size () const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32	length () const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE symbol_type	operator[] (const uint32 i) const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE reference	operator[] (const uint32 i)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE coord_type	coords () const
iterator	begin ()
iterator	end ()
const_iterator	begin () const
const_iterator	end () const

Public Members
string_type	m_string
	the underlying string set More...
coord_type	m_coords
	the prefix coordinates More...

Member Typedef Documentation

template<typename StringType , typename CoordType >

typedef string_traits<StringType>::const_iterator nvbio::PrefixCore< StringType, CoordType, 1u >::const_iterator

Definition at line 91 of file prefix.h.

template<typename StringType , typename CoordType >

typedef CoordType nvbio::PrefixCore< StringType, CoordType, 1u >::coord_type

Definition at line 83 of file prefix.h.

template<typename StringType , typename CoordType >

typedef string_traits<StringType>::forward_iterator nvbio::PrefixCore< StringType, CoordType, 1u >::forward_iterator

Definition at line 92 of file prefix.h.

template<typename StringType , typename CoordType >

typedef vector_traits<CoordType>::value_type nvbio::PrefixCore< StringType, CoordType, 1u >::index_type

Definition at line 84 of file prefix.h.

template<typename StringType , typename CoordType >

typedef string_traits<StringType>::iterator nvbio::PrefixCore< StringType, CoordType, 1u >::iterator

Definition at line 90 of file prefix.h.

template<typename StringType , typename CoordType >

typedef std::iterator_traits<string_type>::reference nvbio::PrefixCore< StringType, CoordType, 1u >::reference

Definition at line 88 of file prefix.h.

template<typename StringType , typename CoordType >

typedef StringType nvbio::PrefixCore< StringType, CoordType, 1u >::string_type

Definition at line 82 of file prefix.h.

template<typename StringType , typename CoordType >

typedef std::iterator_traits<string_type>::value_type nvbio::PrefixCore< StringType, CoordType, 1u >::symbol_type

Definition at line 86 of file prefix.h.

template<typename StringType , typename CoordType >

typedef std::iterator_traits<string_type>::value_type nvbio::PrefixCore< StringType, CoordType, 1u >::value_type

Definition at line 87 of file prefix.h.

Constructor & Destructor Documentation

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::PrefixCore< StringType, CoordType, 1u >::PrefixCore ( )

inline

constructor

Definition at line 97 of file prefix.h.

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::PrefixCore< StringType, CoordType, 1u >::PrefixCore ( const string_type  string, const coord_type  prefix  )

inline

constructor

Definition at line 102 of file prefix.h.

Member Function Documentation

template<typename StringType , typename CoordType >

iterator nvbio::PrefixCore< StringType, CoordType, 1u >::begin ( void  )

inline

return an iterator

Definition at line 135 of file prefix.h.

template<typename StringType , typename CoordType >

const_iterator nvbio::PrefixCore< StringType, CoordType, 1u >::begin ( void  ) const

inline

return an iterator

Definition at line 143 of file prefix.h.

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE coord_type nvbio::PrefixCore< StringType, CoordType, 1u >::coords ( ) const

inline

return the prefix coordinates

Definition at line 131 of file prefix.h.

template<typename StringType , typename CoordType >

iterator nvbio::PrefixCore< StringType, CoordType, 1u >::end ( void  )

inline

return an iterator

Definition at line 139 of file prefix.h.

template<typename StringType , typename CoordType >

const_iterator nvbio::PrefixCore< StringType, CoordType, 1u >::end ( void  ) const

inline

return an iterator

Definition at line 147 of file prefix.h.

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32 nvbio::PrefixCore< StringType, CoordType, 1u >::length ( ) const

inline

prefix length

Definition at line 116 of file prefix.h.

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE symbol_type nvbio::PrefixCore< StringType, CoordType, 1u >::operator[] ( const uint32  i) const

inline

indexing operator

Definition at line 121 of file prefix.h.

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE reference nvbio::PrefixCore< StringType, CoordType, 1u >::operator[] ( const uint32  i)

inline

indexing operator

Definition at line 126 of file prefix.h.

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32 nvbio::PrefixCore< StringType, CoordType, 1u >::size ( void  ) const

inline

prefix size

Definition at line 111 of file prefix.h.

Member Data Documentation

template<typename StringType , typename CoordType >

coord_type nvbio::PrefixCore< StringType, CoordType, 1u >::m_coords

the prefix coordinates

Definition at line 150 of file prefix.h.

template<typename StringType , typename CoordType >

string_type nvbio::PrefixCore< StringType, CoordType, 1u >::m_string

the underlying string set

Definition at line 149 of file prefix.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/strings/prefix.h