NVBIO
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DeviceThreadScheduler specialization of BatchedBandedAlignmentScore.
stream_type | the stream of alignment jobs |
Definition at line 136 of file batched_banded_inl.h.
#include <batched_banded_inl.h>
Public Types | |
typedef stream_type::aligner_type | aligner_type |
typedef column_storage_type < aligner_type >::type | cell_type |
Public Methods | |
void | enact (stream_type stream, uint64 temp_size=0u, uint8 *temp=NULL) |
Static Public Methods | |
static uint64 | min_temp_storage (const uint32 max_pattern_len, const uint32 max_text_len, const uint32 stream_size) |
static uint64 | max_temp_storage (const uint32 max_pattern_len, const uint32 max_text_len, const uint32 stream_size) |
typedef stream_type::aligner_type nvbio::aln::BatchedBandedAlignmentScore< BAND_LEN, stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > >::aligner_type |
Definition at line 138 of file batched_banded_inl.h.
typedef column_storage_type<aligner_type>::type nvbio::aln::BatchedBandedAlignmentScore< BAND_LEN, stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > >::cell_type |
Definition at line 139 of file batched_banded_inl.h.
void nvbio::aln::BatchedBandedAlignmentScore< BAND_LEN, stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > >::enact | ( | stream_type | stream, |
uint64 | temp_size = 0u , |
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uint8 * | temp = NULL |
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enact the batch execution
Definition at line 157 of file batched_banded_inl.h.
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inlinestatic |
return the maximum number of bytes required by the algorithm
Definition at line 147 of file batched_banded_inl.h.
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inlinestatic |
return the minimum number of bytes required by the algorithm
Definition at line 143 of file batched_banded_inl.h.