NVBIO
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A helper scoring context class, instantiated to configure sw_alignment_score_dispatch to perform scoring in windows
Definition at line 104 of file sw_banded_inl.h.
#include <sw_banded_inl.h>
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NVBIO_FORCEINLINE NVBIO_HOST_DEVICE | SmithWatermanCheckpointedScoringContext (checkpoint_type checkpoints) |
template<typename band_type , typename scoring_type , typename score_type > | |
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void | init (const uint32 i, band_type &band, const scoring_type &scoring, const score_type infimum) |
template<typename band_type > | |
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void | previous_row (const uint32 i, const band_type &band) |
template<typename band_type > | |
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void | last_row (const uint32 i, const band_type &band) |
template<typename score_type > | |
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void | new_cell (const uint32 i, const uint32 j, const score_type score, const DirectionVector dir) |
Public Members | |
checkpoint_type | m_checkpoints |
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Definition at line 107 of file sw_banded_inl.h.
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Definition at line 112 of file sw_banded_inl.h.
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Definition at line 138 of file sw_banded_inl.h.
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Definition at line 153 of file sw_banded_inl.h.
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Definition at line 132 of file sw_banded_inl.h.
checkpoint_type nvbio::aln::priv::banded::SmithWatermanCheckpointedScoringContext< BAND_LEN, TYPE, checkpoint_type >::m_checkpoints |
Definition at line 159 of file sw_banded_inl.h.