NVBIO
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A helper scoring context class, which can be used to adapt the basic sw_alignment_score_dispatch algorithm to various situations, such as: scoring scoring within a window (i.e. saving only the last band within the window) computing checkpoints computing a flow submatrix
Definition at line 65 of file sw_banded_inl.h.
#include <sw_banded_inl.h>
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template<typename band_type , typename scoring_type , typename score_type > | |
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void | init (const uint32 i, band_type &band, const scoring_type &scoring, const score_type infimum) |
template<typename band_type > | |
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void | previous_row (const uint32 i, const band_type &band) |
template<typename band_type > | |
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void | last_row (const uint32 i, const band_type &band) |
template<typename score_type > | |
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void | new_cell (const uint32 i, const uint32 j, const score_type score, const DirectionVector dir) |
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Definition at line 69 of file sw_banded_inl.h.
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Definition at line 86 of file sw_banded_inl.h.
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Definition at line 92 of file sw_banded_inl.h.
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Definition at line 80 of file sw_banded_inl.h.