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nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceStorage Struct Reference

Detailed description

The SeedHitDequeArray device storage class

Definition at line 62 of file seed_hit_deque_array.h.

#include <seed_hit_deque_array.h>

Inheritance diagram for nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceStorage:
nvbio::bowtie2::cuda::SeedHitDequeArray

Public Types

typedef thrust::device_vector
< SeedHit
hits_storage_type
 
typedef thrust::device_vector
< uint32
index_storage_type
 
typedef thrust::device_vector
< float > 
prob_storage_type
 

Public Members

hits_storage_type m_hits
 global arena of seed hit SA ranges More...
 
index_storage_type m_counts
 per-read seed hit counters More...
 
prob_storage_type m_probs
 global arena of SA probabilities More...
 
index_storage_type m_index
 per-read index marking the beginning of the read's hits vector in the global arena More...
 
index_storage_type m_probs_index
 per-read index marking the beginning of the read's hits vector in the global arena More...
 
index_storage_type m_pool
 pool counter for the global arena More...
 
index_storage_type m_probs_pool
 pool counter for the global arena More...
 

Member Typedef Documentation

Definition at line 64 of file seed_hit_deque_array.h.

Definition at line 65 of file seed_hit_deque_array.h.

Definition at line 66 of file seed_hit_deque_array.h.

Member Data Documentation

index_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceStorage::m_counts

per-read seed hit counters

Definition at line 69 of file seed_hit_deque_array.h.

hits_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceStorage::m_hits

global arena of seed hit SA ranges

Definition at line 68 of file seed_hit_deque_array.h.

index_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceStorage::m_index

per-read index marking the beginning of the read's hits vector in the global arena

Definition at line 71 of file seed_hit_deque_array.h.

index_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceStorage::m_pool

pool counter for the global arena

Definition at line 73 of file seed_hit_deque_array.h.

prob_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceStorage::m_probs

global arena of SA probabilities

Definition at line 70 of file seed_hit_deque_array.h.

index_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceStorage::m_probs_index

per-read index marking the beginning of the read's hits vector in the global arena

Definition at line 72 of file seed_hit_deque_array.h.

index_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceStorage::m_probs_pool

pool counter for the global arena

Definition at line 74 of file seed_hit_deque_array.h.


The documentation for this struct was generated from the following file: