NVBIO
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The SeedHitDequeArray host storage class
Definition at line 80 of file seed_hit_deque_array.h.
#include <seed_hit_deque_array.h>
Public Types | |
typedef thrust::host_vector < SeedHit > | hits_storage_type |
typedef thrust::host_vector < uint32 > | index_storage_type |
typedef thrust::host_vector < float > | prob_storage_type |
Public Methods | |
SeedHitDequeArrayHostStorage (const SeedHitDequeArrayDeviceStorage &other) | |
SeedHitDequeArrayHostStorage & | operator= (const SeedHitDequeArrayDeviceStorage &other) |
Public Members | |
hits_storage_type | m_hits |
global arena of seed hit SA ranges More... | |
index_storage_type | m_counts |
per-read seed hit counters More... | |
prob_storage_type | m_probs |
global arena of SA probabilities More... | |
index_storage_type | m_index |
per-read index marking the beginning of the read's hits vector in the global arena More... | |
index_storage_type | m_probs_index |
per-read index marking the beginning of the read's hits vector in the global arena More... | |
index_storage_type | m_pool |
pool counter for the global arena More... | |
index_storage_type | m_probs_pool |
pool counter for the global arena More... | |
typedef thrust::host_vector<SeedHit> nvbio::bowtie2::cuda::SeedHitDequeArrayHostStorage::hits_storage_type |
Definition at line 82 of file seed_hit_deque_array.h.
typedef thrust::host_vector<uint32> nvbio::bowtie2::cuda::SeedHitDequeArrayHostStorage::index_storage_type |
Definition at line 83 of file seed_hit_deque_array.h.
typedef thrust::host_vector<float> nvbio::bowtie2::cuda::SeedHitDequeArrayHostStorage::prob_storage_type |
Definition at line 84 of file seed_hit_deque_array.h.
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inline |
copy constructor
Definition at line 88 of file seed_hit_deque_array.h.
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inline |
copy from a device object
Definition at line 92 of file seed_hit_deque_array.h.
index_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayHostStorage::m_counts |
per-read seed hit counters
Definition at line 105 of file seed_hit_deque_array.h.
hits_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayHostStorage::m_hits |
global arena of seed hit SA ranges
Definition at line 104 of file seed_hit_deque_array.h.
index_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayHostStorage::m_index |
per-read index marking the beginning of the read's hits vector in the global arena
Definition at line 107 of file seed_hit_deque_array.h.
index_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayHostStorage::m_pool |
pool counter for the global arena
Definition at line 109 of file seed_hit_deque_array.h.
prob_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayHostStorage::m_probs |
global arena of SA probabilities
Definition at line 106 of file seed_hit_deque_array.h.
index_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayHostStorage::m_probs_index |
per-read index marking the beginning of the read's hits vector in the global arena
Definition at line 108 of file seed_hit_deque_array.h.
index_storage_type nvbio::bowtie2::cuda::SeedHitDequeArrayHostStorage::m_probs_pool |
pool counter for the global arena
Definition at line 110 of file seed_hit_deque_array.h.