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nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type Struct Reference

Detailed description

template< AlignmentStreamType TYPE, typename AlignerType, typename PipelineType>
struct nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type

an alignment context

Definition at line 282 of file alignment_utils.h.

#include <alignment_utils.h>

Inheritance diagram for nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type:
nvbio::bowtie2::cuda::detail::AlignmentStreamContext< TYPE >

Public Members

uint32 idx
 
uint32 mate
 
uint2 read_range
 
uint32 read_id
 
uint32 read_rc
 
uint32 genome_begin
 
uint32 genome_end
 
int32 min_score
 

Member Data Documentation

template<AlignmentStreamType TYPE, typename AlignerType, typename PipelineType>
uint32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::genome_begin

Definition at line 289 of file alignment_utils.h.

template<AlignmentStreamType TYPE, typename AlignerType, typename PipelineType>
uint32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::genome_end

Definition at line 290 of file alignment_utils.h.

template<AlignmentStreamType TYPE, typename AlignerType, typename PipelineType>
uint32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::idx

Definition at line 284 of file alignment_utils.h.

template<AlignmentStreamType TYPE, typename AlignerType, typename PipelineType>
uint32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::mate

Definition at line 285 of file alignment_utils.h.

template<AlignmentStreamType TYPE, typename AlignerType, typename PipelineType>
int32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::min_score

Definition at line 291 of file alignment_utils.h.

template<AlignmentStreamType TYPE, typename AlignerType, typename PipelineType>
uint32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::read_id

Definition at line 287 of file alignment_utils.h.

template<AlignmentStreamType TYPE, typename AlignerType, typename PipelineType>
uint2 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::read_range

Definition at line 286 of file alignment_utils.h.

template<AlignmentStreamType TYPE, typename AlignerType, typename PipelineType>
uint32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::read_rc

Definition at line 288 of file alignment_utils.h.


The documentation for this struct was generated from the following file: