nvbio::bowtie2::cuda::detail::AlignmentStreamContext< TRACEBACK_STREAM > Struct Template Reference

Detailed description

template<>
struct nvbio::bowtie2::cuda::detail::AlignmentStreamContext< TRACEBACK_STREAM >

Base class for the traceback alignment contexts

Definition at line 255 of file alignment_utils.h.

#include <alignment_utils.h>

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	AlignmentStreamContext ()

Public Members
io::Cigar	cigar [1024]
	output CIGAR storage More...
Backtracker< io::Cigar * >	backtracer
	output alignment backtracer More...
aln::Alignment< int32 >	alignment
	output alignment More...

Constructor & Destructor Documentation

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::bowtie2::cuda::detail::AlignmentStreamContext< TRACEBACK_STREAM >::AlignmentStreamContext ( )

inline

constructor

Definition at line 264 of file alignment_utils.h.

Member Data Documentation

aln::Alignment<int32> nvbio::bowtie2::cuda::detail::AlignmentStreamContext< TRACEBACK_STREAM >::alignment

output alignment

Definition at line 259 of file alignment_utils.h.

Backtracker<io::Cigar*> nvbio::bowtie2::cuda::detail::AlignmentStreamContext< TRACEBACK_STREAM >::backtracer

output alignment backtracer

Definition at line 258 of file alignment_utils.h.

io::Cigar nvbio::bowtie2::cuda::detail::AlignmentStreamContext< TRACEBACK_STREAM >::cigar[1024]

output CIGAR storage

Definition at line 257 of file alignment_utils.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvBowtie/bowtie2/cuda/alignment_utils.h