NVBIO
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perform approximate seed-mapping allowing 0 mismatches in the subseed and 1 mismatch in the remainder of the seed
Definition at line 319 of file mapping_inl.h.
#include <mapping_inl.h>
Static Public Methods | |
template<typename SeedIterator , typename FMType , typename rFMType , typename HitType > | |
NVBIO_FORCEINLINE static NVBIO_DEVICE void | enact (const FMType fmi, const rFMType rfmi, const SeedIterator seed, const uint2 read_range, const uint32 pos, const uint32 seed_len, HitType &hitheap, uint32 &range_sum, uint32 &range_count, const ParamsPOD ¶ms, const bool fw, const bool rc) |
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inlinestatic |
Definition at line 323 of file mapping_inl.h.