coord_dim | nvbio::MEMFilter< host_tag, fm_index_type > | static |
coord_type typedef | nvbio::MEMFilter< host_tag, fm_index_type > | |
first_hit(const uint32 string_id) const | nvbio::MEMFilter< host_tag, fm_index_type > | |
hit_type typedef | nvbio::MEMFilter< host_tag, fm_index_type > | |
index_type typedef | nvbio::MEMFilter< host_tag, fm_index_type > | |
locate(const uint64 begin, const uint64 end, mems_iterator mems) | nvbio::MEMFilter< host_tag, fm_index_type > | |
m_f_index | nvbio::MEMFilter< host_tag, fm_index_type > | |
m_mem_ranges | nvbio::MEMFilter< host_tag, fm_index_type > | |
m_n_occurrences | nvbio::MEMFilter< host_tag, fm_index_type > | |
m_n_queries | nvbio::MEMFilter< host_tag, fm_index_type > | |
m_r_index | nvbio::MEMFilter< host_tag, fm_index_type > | |
m_slots | nvbio::MEMFilter< host_tag, fm_index_type > | |
mem_type typedef | nvbio::MEMFilter< host_tag, fm_index_type > | |
n_hits() const | nvbio::MEMFilter< host_tag, fm_index_type > | inline |
n_mems() const | nvbio::MEMFilter< host_tag, fm_index_type > | inline |
n_ranges() const | nvbio::MEMFilter< host_tag, fm_index_type > | inline |
rank(const fm_index_type &f_index, const fm_index_type &r_index, const string_set_type &string_set, const uint32 min_intv=1u, const uint32 max_intv=uint32(-1), const uint32 min_span=1u, const uint32 split_len=uint32(-1), const uint32 split_width=uint32(-1)) | nvbio::MEMFilter< host_tag, fm_index_type > | |
rank_type typedef | nvbio::MEMFilter< host_tag, fm_index_type > | |
system_tag typedef | nvbio::MEMFilter< host_tag, fm_index_type > | |