nvbio::PrefixCore< StringType, CoordType, 2u > Struct Template Reference

Detailed description

template< typename StringType, typename CoordType>
struct nvbio::PrefixCore< StringType, CoordType, 2u >

A class to represent a string prefix, i.e. an arbitrarily placed substring

Template Parameters

StringType	the underlying string type
CoordType	the type of prefix coordinates, uint32|uint64

Definition at line 161 of file prefix.h.

#include <prefix.h>

Public Types
typedef StringType	string_type
typedef CoordType	coord_type
typedef vector_traits < CoordType >::value_type	index_type
typedef std::iterator_traits < string_type >::value_type	symbol_type
typedef std::iterator_traits < string_type >::value_type	value_type
typedef std::iterator_traits < string_type >::reference	reference
typedef string_traits < StringType >::iterator	iterator
typedef string_traits < StringType >::const_iterator	const_iterator
typedef string_traits < StringType > ::forward_iterator	forward_iterator

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	PrefixCore ()
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	PrefixCore (const string_type string, const coord_type prefix)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32	size () const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32	length () const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE symbol_type	operator[] (const uint32 i) const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE reference	operator[] (const uint32 i)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE coord_type	coords () const
iterator	begin ()
iterator	end ()
const_iterator	begin () const
const_iterator	end () const

Public Members
string_type	m_string
	the underlying string set More...
coord_type	m_coords
	the prefix coordinates More...

Member Typedef Documentation

template<typename StringType , typename CoordType >

typedef string_traits<StringType>::const_iterator nvbio::PrefixCore< StringType, CoordType, 2u >::const_iterator

Definition at line 172 of file prefix.h.

template<typename StringType , typename CoordType >

typedef CoordType nvbio::PrefixCore< StringType, CoordType, 2u >::coord_type

Definition at line 164 of file prefix.h.

template<typename StringType , typename CoordType >

typedef string_traits<StringType>::forward_iterator nvbio::PrefixCore< StringType, CoordType, 2u >::forward_iterator

Definition at line 173 of file prefix.h.

template<typename StringType , typename CoordType >

typedef vector_traits<CoordType>::value_type nvbio::PrefixCore< StringType, CoordType, 2u >::index_type

Definition at line 165 of file prefix.h.

template<typename StringType , typename CoordType >

typedef string_traits<StringType>::iterator nvbio::PrefixCore< StringType, CoordType, 2u >::iterator

Definition at line 171 of file prefix.h.

template<typename StringType , typename CoordType >

typedef std::iterator_traits<string_type>::reference nvbio::PrefixCore< StringType, CoordType, 2u >::reference

Definition at line 169 of file prefix.h.

template<typename StringType , typename CoordType >

typedef StringType nvbio::PrefixCore< StringType, CoordType, 2u >::string_type

Definition at line 163 of file prefix.h.

template<typename StringType , typename CoordType >

typedef std::iterator_traits<string_type>::value_type nvbio::PrefixCore< StringType, CoordType, 2u >::symbol_type

Definition at line 167 of file prefix.h.

template<typename StringType , typename CoordType >

typedef std::iterator_traits<string_type>::value_type nvbio::PrefixCore< StringType, CoordType, 2u >::value_type

Definition at line 168 of file prefix.h.

Constructor & Destructor Documentation

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::PrefixCore< StringType, CoordType, 2u >::PrefixCore ( )

inline

constructor

Definition at line 178 of file prefix.h.

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::PrefixCore< StringType, CoordType, 2u >::PrefixCore ( const string_type  string, const coord_type  prefix  )

inline

constructor

Definition at line 183 of file prefix.h.

Member Function Documentation

template<typename StringType , typename CoordType >

iterator nvbio::PrefixCore< StringType, CoordType, 2u >::begin ( void  )

inline

return an iterator

Definition at line 216 of file prefix.h.

template<typename StringType , typename CoordType >

const_iterator nvbio::PrefixCore< StringType, CoordType, 2u >::begin ( void  ) const

inline

return an iterator

Definition at line 224 of file prefix.h.

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE coord_type nvbio::PrefixCore< StringType, CoordType, 2u >::coords ( ) const

inline

return the prefix coordinates

Definition at line 212 of file prefix.h.

template<typename StringType , typename CoordType >

iterator nvbio::PrefixCore< StringType, CoordType, 2u >::end ( void  )

inline

return an iterator

Definition at line 220 of file prefix.h.

template<typename StringType , typename CoordType >

const_iterator nvbio::PrefixCore< StringType, CoordType, 2u >::end ( void  ) const

inline

return an iterator

Definition at line 228 of file prefix.h.

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32 nvbio::PrefixCore< StringType, CoordType, 2u >::length ( ) const

inline

prefix length

Definition at line 197 of file prefix.h.

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE symbol_type nvbio::PrefixCore< StringType, CoordType, 2u >::operator[] ( const uint32  i) const

inline

indexing operator

Definition at line 202 of file prefix.h.

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE reference nvbio::PrefixCore< StringType, CoordType, 2u >::operator[] ( const uint32  i)

inline

indexing operator

Definition at line 207 of file prefix.h.

template<typename StringType , typename CoordType >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32 nvbio::PrefixCore< StringType, CoordType, 2u >::size ( void  ) const

inline

prefix size

Definition at line 192 of file prefix.h.

Member Data Documentation

template<typename StringType , typename CoordType >

coord_type nvbio::PrefixCore< StringType, CoordType, 2u >::m_coords

the prefix coordinates

Definition at line 231 of file prefix.h.

template<typename StringType , typename CoordType >

string_type nvbio::PrefixCore< StringType, CoordType, 2u >::m_string

the underlying string set

Definition at line 230 of file prefix.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/strings/prefix.h