nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator > Member List

This is the complete list of members for nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >, including all inherited members.

coord_type typedef	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
d_temp_storage	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
diagonal_type typedef	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
diagonals(const uint32 n_hits, const hits_iterator hits, output_iterator diags, const uint32 interval=1)	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
hit_type typedef	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
locate(const uint64 begin, const uint64 end, hits_iterator hits)	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
m_diags	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
m_indices	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
m_n_occurrences	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
m_n_queries	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
m_qgram_index	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
m_queries	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
m_ranges	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
m_slots	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
merge(const uint32 interval, const uint32 n_hits, const hits_iterator hits, output_iterator merged_hits, count_iterator merged_counts)	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
qgram_index_view typedef	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
ranges() const	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >	inline
rank(const qgram_index_type &qgram_index, const uint32 n_queries, const query_iterator queries, const index_iterator indices)	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >
ranks() const	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >	inline
system_tag typedef	nvbio::QGramFilter< device_tag, qgram_index_type, query_iterator, index_iterator >