Detailed description

DeviceThreadScheduler specialization of BatchedAlignmentScore.

Template Parameters

stream_type the stream of alignment jobs

Definition at line 330 of file batched_inl.h.

Public Types
typedef stream_type::aligner_type	aligner_type

typedef column_storage_type < aligner_type >::type	cell_type

Public Methods
void	enact (stream_type stream, uint64 temp_size=0u, uint8 *temp=NULL)

Static Public Methods
static uint32	column_storage (const uint32 max_pattern_len, const uint32 max_text_len)

static uint64	min_temp_storage (const uint32 max_pattern_len, const uint32 max_text_len, const uint32 stream_size)

static uint64	max_temp_storage (const uint32 max_pattern_len, const uint32 max_text_len, const uint32 stream_size)

Member Typedef Documentation

template<uint32 BLOCKDIM, uint32 MINBLOCKS, typename stream_type >

typedef stream_type::aligner_type nvbio::aln::BatchedAlignmentScore< stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > >::aligner_type

Definition at line 332 of file batched_inl.h.

template<uint32 BLOCKDIM, uint32 MINBLOCKS, typename stream_type >

Definition at line 333 of file batched_inl.h.

template<uint32 BLOCKDIM, uint32 MINBLOCKS, typename stream_type >

static uint32 nvbio::aln::BatchedAlignmentScore< stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > >::column_storage	(	const uint32	max_pattern_len,
		const uint32	max_text_len
	)

inlinestatic

return the per-element column storage size

Definition at line 337 of file batched_inl.h.

The documentation for this struct was generated from the following file: