aligner_type typedef | nvbio::aln::BatchedAlignmentTraceback< CHECKPOINTS, stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > > | |
cell_type typedef | nvbio::aln::BatchedAlignmentTraceback< CHECKPOINTS, stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > > | |
checkpoint_storage(const uint32 max_pattern_len, const uint32 max_text_len) | nvbio::aln::BatchedAlignmentTraceback< CHECKPOINTS, stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > > | inlinestatic |
column_storage(const uint32 max_pattern_len, const uint32 max_text_len) | nvbio::aln::BatchedAlignmentTraceback< CHECKPOINTS, stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > > | inlinestatic |
element_storage(const uint32 max_pattern_len, const uint32 max_text_len) | nvbio::aln::BatchedAlignmentTraceback< CHECKPOINTS, stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > > | inlinestatic |
enact(stream_type stream, uint64 temp_size=0u, uint8 *temp=NULL) | nvbio::aln::BatchedAlignmentTraceback< CHECKPOINTS, stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > > | |
max_temp_storage(const uint32 max_pattern_len, const uint32 max_text_len, const uint32 stream_size) | nvbio::aln::BatchedAlignmentTraceback< CHECKPOINTS, stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > > | static |
min_temp_storage(const uint32 max_pattern_len, const uint32 max_text_len, const uint32 stream_size) | nvbio::aln::BatchedAlignmentTraceback< CHECKPOINTS, stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > > | static |
submatrix_storage(const uint32 max_pattern_len, const uint32 max_text_len) | nvbio::aln::BatchedAlignmentTraceback< CHECKPOINTS, stream_type, DeviceThreadBlockScheduler< BLOCKDIM, MINBLOCKS > > | inlinestatic |