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nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >::strings_type Struct Reference

Detailed description

template< typename t_aligner_type, typename pattern_set_type, typename qualities_set_type, typename text_set_type, typename sink_iterator>
struct nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >::strings_type

Definition at line 883 of file batched_inl.h.

#include <batched_inl.h>

Public Members

pattern_prefetcher_type pattern_prefetcher
 
text_prefetcher_type text_prefetcher
 
pattern_string pattern
 
quals_string quals
 
text_string text
 

Member Data Documentation

template<typename t_aligner_type , typename pattern_set_type , typename qualities_set_type , typename text_set_type , typename sink_iterator >
pattern_string nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >::strings_type::pattern

Definition at line 888 of file batched_inl.h.

template<typename t_aligner_type , typename pattern_set_type , typename qualities_set_type , typename text_set_type , typename sink_iterator >
pattern_prefetcher_type nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >::strings_type::pattern_prefetcher

Definition at line 885 of file batched_inl.h.

template<typename t_aligner_type , typename pattern_set_type , typename qualities_set_type , typename text_set_type , typename sink_iterator >
quals_string nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >::strings_type::quals

Definition at line 889 of file batched_inl.h.

template<typename t_aligner_type , typename pattern_set_type , typename qualities_set_type , typename text_set_type , typename sink_iterator >
text_string nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >::strings_type::text

Definition at line 890 of file batched_inl.h.

template<typename t_aligner_type , typename pattern_set_type , typename qualities_set_type , typename text_set_type , typename sink_iterator >
text_prefetcher_type nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >::strings_type::text_prefetcher

Definition at line 886 of file batched_inl.h.


The documentation for this struct was generated from the following file: