This is the complete list of members for nvbio::aln::priv::GotohCheckpointedScoringContext< BAND_LEN, TYPE, algorithm_tag, checkpoint_type >, including all inherited members.
GotohCheckpointedScoringContext(checkpoint_type checkpoint) | nvbio::aln::priv::GotohCheckpointedScoringContext< BAND_LEN, TYPE, algorithm_tag, checkpoint_type > | inline |
init(const uint32 j, const uint32 N, column_type &column, const scoring_type &scoring, const score_type zero, const score_type infimum) | nvbio::aln::priv::GotohCheckpointedScoringContext< BAND_LEN, TYPE, algorithm_tag, checkpoint_type > | inline |
last_column(const uint32 j, const uint32 M, const uint32 N, const column_type column) | nvbio::aln::priv::GotohCheckpointedScoringContext< BAND_LEN, TYPE, algorithm_tag, checkpoint_type > | inline |
m_checkpoint | nvbio::aln::priv::GotohCheckpointedScoringContext< BAND_LEN, TYPE, algorithm_tag, checkpoint_type > | |
new_cell(const uint32 i, const uint32 N, const uint32 j, const uint32 M, const score_type score, const DirectionVector dir, const DirectionVector edir, const DirectionVector fdir) | nvbio::aln::priv::GotohCheckpointedScoringContext< BAND_LEN, TYPE, algorithm_tag, checkpoint_type > | inline |
previous_column(const uint32 j, const uint32 N, const column_type column) | nvbio::aln::priv::GotohCheckpointedScoringContext< BAND_LEN, TYPE, algorithm_tag, checkpoint_type > | inline |