nvbio::aln::priv::MyersBitVectors< 4 > Struct Template Reference

Detailed description

template<>
struct nvbio::aln::priv::MyersBitVectors< 4 >

A set of Myers bit-vectors for 4-letter alphabets

Definition at line 114 of file myers_banded_inl.h.

#include <myers_banded_inl.h>

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	MyersBitVectors ()
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	load (const uint8 c, const uint32 v)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32	get (const uint8 c) const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	shift ()

Public Members
uint32	B [4]

Constructor & Destructor Documentation

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::aln::priv::MyersBitVectors< 4 >::MyersBitVectors ( )

inline

Definition at line 117 of file myers_banded_inl.h.

Member Function Documentation

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32 nvbio::aln::priv::MyersBitVectors< 4 >::get ( const uint8  c) const

inline

Definition at line 135 of file myers_banded_inl.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void nvbio::aln::priv::MyersBitVectors< 4 >::load ( const uint8  c, const uint32  v  )

inline

Definition at line 125 of file myers_banded_inl.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void nvbio::aln::priv::MyersBitVectors< 4 >::shift ( )

inline

Definition at line 144 of file myers_banded_inl.h.

Member Data Documentation

uint32 nvbio::aln::priv::MyersBitVectors< 4 >::B[4]

Definition at line 151 of file myers_banded_inl.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/alignment/myers/myers_banded_inl.h