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nvbio::aln::priv::SWScoringContext< BAND_LEN, TYPE, algorithm_tag > Member List

This is the complete list of members for nvbio::aln::priv::SWScoringContext< BAND_LEN, TYPE, algorithm_tag >, including all inherited members.

init(const uint32 j, const uint32 N, column_type &column, const scoring_type &scoring, const score_type zero)nvbio::aln::priv::SWScoringContext< BAND_LEN, TYPE, algorithm_tag >inline
last_column(const uint32 j, const uint32 M, const uint32 N, const column_type column)nvbio::aln::priv::SWScoringContext< BAND_LEN, TYPE, algorithm_tag >inline
new_cell(const uint32 i, const uint32 N, const uint32 j, const uint32 M, const score_type score, const DirectionVector dir)nvbio::aln::priv::SWScoringContext< BAND_LEN, TYPE, algorithm_tag >inline
previous_column(const uint32 j, const uint32 N, const column_type column)nvbio::aln::priv::SWScoringContext< BAND_LEN, TYPE, algorithm_tag >inline