This is the complete list of members for nvbio::aln::priv::gotoh_alignment_score_dispatch< BAND_LEN, TYPE, TextBlockingTag, symbol_type >, including all inherited members.

run(const scoring_type &scoring, context_type &context, query_type query, qual_type quals, ref_type ref, const int32 min_score, sink_type &sink, const uint32 window_begin, const uint32 window_end, column_type temp)	nvbio::aln::priv::gotoh_alignment_score_dispatch< BAND_LEN, TYPE, TextBlockingTag, symbol_type >	inlinestatic
run(const scoring_type &scoring, context_type &context, string_type query, qual_type quals, ref_type ref, const int32 min_score, sink_type &sink, const uint32 window_begin, const uint32 window_end)	nvbio::aln::priv::gotoh_alignment_score_dispatch< BAND_LEN, TYPE, TextBlockingTag, symbol_type >	inlinestatic
update_row(context_type &context, const uint32 block, const uint32 N, const uint32 i, const uint32 M, const symbol_type q_i, const uint8 qq_i, const ref_cache r_cache, temp_iterator temp, score_type &temp_i, score_type H_band, score_type F_band, sink_type &sink, const score_type min_score, score_type &max_score, const score_type G_o, const score_type G_e, const score_type zero, const scoring_type scoring)	nvbio::aln::priv::gotoh_alignment_score_dispatch< BAND_LEN, TYPE, TextBlockingTag, symbol_type >	inlinestatic