NVBIO
|
an alignment context
Definition at line 282 of file alignment_utils.h.
#include <alignment_utils.h>
Public Members | |
uint32 | idx |
uint32 | mate |
uint2 | read_range |
uint32 | read_id |
uint32 | read_rc |
uint32 | genome_begin |
uint32 | genome_end |
int32 | min_score |
uint32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::genome_begin |
Definition at line 289 of file alignment_utils.h.
uint32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::genome_end |
Definition at line 290 of file alignment_utils.h.
uint32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::idx |
Definition at line 284 of file alignment_utils.h.
uint32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::mate |
Definition at line 285 of file alignment_utils.h.
int32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::min_score |
Definition at line 291 of file alignment_utils.h.
uint32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::read_id |
Definition at line 287 of file alignment_utils.h.
uint2 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::read_range |
Definition at line 286 of file alignment_utils.h.
uint32 nvbio::bowtie2::cuda::detail::AlignmentStreamBase< TYPE, AlignerType, PipelineType >::context_type::read_rc |
Definition at line 288 of file alignment_utils.h.