nvbio::bowtie2::cuda::detail::BestScoreStream< AlignerType, PipelineType > Member List

This is the complete list of members for nvbio::bowtie2::cuda::detail::BestScoreStream< AlignerType, PipelineType >, including all inherited members.

aligner() const	nvbio::bowtie2::cuda::detail::AlignmentStreamBase< SCORE_STREAM, AlignerType, PipelineType >	inline
aligner_type typedef	nvbio::bowtie2::cuda::detail::AlignmentStreamBase< SCORE_STREAM, AlignerType, PipelineType >
AlignmentStreamBase(const PipelineType _pipeline, const aligner_type _aligner, const ParamsPOD _params)	nvbio::bowtie2::cuda::detail::AlignmentStreamBase< SCORE_STREAM, AlignerType, PipelineType >	inline
base_type typedef	nvbio::bowtie2::cuda::detail::BestScoreStream< AlignerType, PipelineType >
BestScoreStream(const uint32 _band_len, const PipelineType _pipeline, const AlignerType _aligner, const ParamsPOD _params)	nvbio::bowtie2::cuda::detail::BestScoreStream< AlignerType, PipelineType >	inline
context_type typedef	nvbio::bowtie2::cuda::detail::BestScoreStream< AlignerType, PipelineType >
init_context(const uint32 i, context_type *context) const	nvbio::bowtie2::cuda::detail::BestScoreStream< AlignerType, PipelineType >	inline
load_strings(const uint32 i, const uint32 window_begin, const uint32 window_end, const context_type *context, strings_type *strings) const	nvbio::bowtie2::cuda::detail::AlignmentStreamBase< SCORE_STREAM, AlignerType, PipelineType >	inline
m_aligner	nvbio::bowtie2::cuda::detail::AlignmentStreamBase< SCORE_STREAM, AlignerType, PipelineType >
m_band_len	nvbio::bowtie2::cuda::detail::BestScoreStream< AlignerType, PipelineType >
m_params	nvbio::bowtie2::cuda::detail::AlignmentStreamBase< SCORE_STREAM, AlignerType, PipelineType >
m_pipeline	nvbio::bowtie2::cuda::detail::AlignmentStreamBase< SCORE_STREAM, AlignerType, PipelineType >
max_pattern_length() const	nvbio::bowtie2::cuda::detail::BestScoreStream< AlignerType, PipelineType >	inline
max_text_length() const	nvbio::bowtie2::cuda::detail::BestScoreStream< AlignerType, PipelineType >	inline
output(const uint32 i, const context_type *context) const	nvbio::bowtie2::cuda::detail::BestScoreStream< AlignerType, PipelineType >	inline
pattern_length(const uint32 i, const context_type *context) const	nvbio::bowtie2::cuda::detail::AlignmentStreamBase< SCORE_STREAM, AlignerType, PipelineType >	inline
scheme_type typedef	nvbio::bowtie2::cuda::detail::BestScoreStream< AlignerType, PipelineType >
size() const	nvbio::bowtie2::cuda::detail::BestScoreStream< AlignerType, PipelineType >	inline
strings_type typedef	nvbio::bowtie2::cuda::detail::AlignmentStreamBase< SCORE_STREAM, AlignerType, PipelineType >
text_length(const uint32 i, const context_type *context) const	nvbio::bowtie2::cuda::detail::AlignmentStreamBase< SCORE_STREAM, AlignerType, PipelineType >	inline