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nvbio::io::ReadDataFile_FASTQ_gz Struct Reference

Detailed description

Definition at line 110 of file reads_fastq.h.

#include <reads_fastq.h>

Inheritance diagram for nvbio::io::ReadDataFile_FASTQ_gz:
nvbio::io::ReadDataFile_FASTQ_parser nvbio::io::ReadDataFile nvbio::io::ReadDataStream

Public Methods

 ReadDataFile_FASTQ_gz (const char *read_file_name, const QualityEncoding qualities, const uint32 max_reads, const uint32 max_read_len, const ReadEncoding flags)
virtual FileState fillBuffer (void)

Additional Inherited Members

- Public Types inherited from nvbio::io::ReadDataFile
enum  FileState {
- Public Members inherited from nvbio::io::ReadDataStream
uint32 m_truncate_read_len
- Static Public Members inherited from nvbio::io::ReadDataFile
static const uint32 LONG_READ = 32*1024
- Proteced Methods inherited from nvbio::io::ReadDataFile_FASTQ_parser
 ReadDataFile_FASTQ_parser (const char *read_file_name, const QualityEncoding quality_encoding, const uint32 max_reads, const uint32 max_read_len, const ReadEncoding flags, const uint32 buffer_size=64536u)
virtual int nextChunk (ReadDataRAM *output, uint32 max_reads, uint32 max_bps)
- Protected Members inherited from nvbio::io::ReadDataFile_FASTQ_parser
const char * m_file_name
QualityEncoding m_quality_encoding
std::vector< char > m_buffer
uint32 m_buffer_size
uint32 m_buffer_pos
uint32 m_line
uint8 m_error_char
std::vector< char > m_name
std::vector< uint8m_read_bp
std::vector< uint8m_read_q

The documentation for this struct was generated from the following files: