Detailed description

Definition at line 110 of file reads_fastq.h.

Inheritance diagram for nvbio::io::ReadDataFile_FASTQ_gz:

Public Methods
	ReadDataFile_FASTQ_gz (const char *read_file_name, const QualityEncoding qualities, const uint32 max_reads, const uint32 max_read_len, const ReadEncoding flags)

virtual FileState	fillBuffer (void)

Additional Inherited Members
Public Types inherited from nvbio::io::ReadDataFile
enum	FileState { FILE_NOT_READY, FILE_OPEN_FAILED, FILE_OK, FILE_EOF, FILE_STREAM_ERROR, FILE_PARSE_ERROR }

Public Members inherited from nvbio::io::ReadDataStream
uint32	m_truncate_read_len

Static Public Members inherited from nvbio::io::ReadDataFile
static const uint32	LONG_READ = 32*1024

Proteced Methods inherited from nvbio::io::ReadDataFile_FASTQ_parser
	ReadDataFile_FASTQ_parser (const char *read_file_name, const QualityEncoding quality_encoding, const uint32 max_reads, const uint32 max_read_len, const ReadEncoding flags, const uint32 buffer_size=64536u)

virtual int	nextChunk (ReadDataRAM *output, uint32 max_reads, uint32 max_bps)

Protected Members inherited from nvbio::io::ReadDataFile_FASTQ_parser
const char *	m_file_name

QualityEncoding	m_quality_encoding

std::vector< char >	m_buffer

uint32	m_buffer_size

uint32	m_buffer_pos

uint32	m_line

uint8	m_error_char

std::vector< char >	m_name

std::vector< uint8 >	m_read_bp

std::vector< uint8 >	m_read_q

The documentation for this struct was generated from the following files:

Public Methods