NVBIO
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loader for FASTA files, possibly gzipped
Definition at line 51 of file sequence_fasta.h.
#include <sequence_fasta.h>
Public Methods | |
SequenceDataFile_FASTA_gz (const char *read_file_name, const SequenceDataFile::Options &options) | |
int | nextChunk (SequenceDataEncoder *output, uint32 max_reads, uint32 max_bps) |
bool | rewind () |
Public Methods inherited from nvbio::io::SequenceDataFile | |
virtual | ~SequenceDataFile () |
virtual int | next (struct SequenceDataEncoder *encoder, const uint32 batch_size, const uint32 batch_bps) |
virtual bool | is_ok (void) |
Public Methods inherited from nvbio::io::SequenceDataInputStream | |
virtual | ~SequenceDataInputStream () |