alignments_inl.h File Reference

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Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::io

Functions
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::io::distinct_alignments (const uint32 pos1, const bool rc1, const uint32 pos2, const bool rc2, const uint32 dist)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::io::distinct_alignments (const uint32 apos1, const uint32 opos1, const bool arc1, const bool orc1, const uint32 apos2, const uint32 opos2, const bool arc2, const bool orc2)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::io::distinct_alignments (const uint32 apos1, const uint32 opos1, const bool arc1, const bool orc1, const uint32 apos2, const uint32 opos2, const bool arc2, const bool orc2, const uint32 dist)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::io::distinct_alignments (const Alignment &p1, const Alignment &p2, const uint32 dist=1)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::io::distinct_alignments (const PairedAlignments &p1, const PairedAlignments &p2)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::io::distinct_alignments (const PairedAlignments &p1, const PairedAlignments &p2, const uint32 dist)