NVBIO
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Modules
Here is a list of all modules:
[detail level 1234]
oWork-Queues
|\WorkQueueDetail
oFASTA
oFASTQ
oQ-Gram Module
|oQ-Gram Index Module
|\Q-Group Index Module
oStrings Module
|oAlphabets
|oString Prefetchers
|oString Sets
||\Private
|oVectorized String Loading
|\Wavelet Trees
oSufsort Module
|oSet-BWTE
|oCompression Sort
|oSet-BWT Handlers
|\String Suffix Handlers
onvBowtie
|oLocate
||\LocateDetail
|oMapping
||\MappingDetail
|oPipeline States
|oScoring
||\ScoringDetail
|oScoring Queues
|oSelect
||\SelectDetail
|oAlignment Module
||oAlignment Type
||oAlgorithm Tags
||oAligner Tags
||oAligners
||oBatch Schedulers
||oBatch Alignments
|||\Private
||oUtilities
||oAlignment Sinks
||\AlignmentDetail
|oDefs
|oReduce
||\ReduceDetail
|oSeedHits
|\Traceback
| \TracebackDetail
onvLighter
oBasic
|oAtomics
|oBloom Filters
|oPing-Pong Queues
|oSort Enactors
|oMemory Mapping
|oUtilities
||oFunctors
||oMeta Functions
||\VectorTypes
|oPacked Streams
||\PackedStringLoaders
|oParallel Primitives
|oPriority Deques
|oPriority Queues
|oSum Trees
|oThreads
|oSystem Tags
|oVector Arrays
|oIterators
|\CUDA
| \Parallel Primitives
oFMIndex
|oRank Dictionaries
|\Sampled Suffix Arrays
oIO
|oFM-Index I/O
|oRead data input
||\ReadsIODetail
|oSequence Data Input
||oSequenceData Views
||\SequenceIODetail
|oOutput
|\Utils
\Tries
 oSorted Dictionary Suffix Tries
 \Suffix Tries
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