bwte.h File Reference

#include <cub/cub.cuh>
#include <mgpuhost.cuh>
#include <moderngpu.cuh>
#include <nvbio/basic/vector.h>
#include <nvbio/strings/string_set.h>
#include <nvbio/sufsort/sufsort.h>
#include <nvbio/sufsort/sufsort_priv.h>
#include <nvbio/sufsort/compression_sort.h>
#include <nvbio/fmindex/paged_text.h>
#include <nvbio/sufsort/bwte_inl.h>

Go to the source code of this file.

Classes
struct	nvbio::BWTEBlock
struct	nvbio::BWTEContext< SYMBOL_SIZE, BIG_ENDIAN, storage_type, offsets_iterator >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.

Functions
template<uint32 SYMBOL_SIZE, bool BIG_ENDIAN, typename storage_type , typename offsets_iterator >
void	nvbio::bwte (const ConcatenatedStringSet< PackedStream< storage_type, uint8, SYMBOL_SIZE, BIG_ENDIAN, typename std::iterator_traits< offsets_iterator >::value_type >, offsets_iterator > string_set, PagedText< SYMBOL_SIZE, BIG_ENDIAN > &BWT_ext, SparseSymbolSet &BWT_ext_dollars, BWTParams *params=NULL)