bwte_inl.h File Reference

#include <cub/cub.cuh>
#include <mgpuhost.cuh>
#include <moderngpu.cuh>
#include <nvbio/sufsort/compression_sort.h>
#include <nvbio/sufsort/sufsort_priv.h>
#include <nvbio/strings/string_set.h>
#include <nvbio/basic/thrust_view.h>
#include <nvbio/basic/cuda/arch.h>
#include <nvbio/basic/cuda/sort.h>
#include <nvbio/basic/vector.h>
#include <nvbio/basic/primitives.h>
#include <nvbio/strings/suffix.h>
#include <thrust/merge.h>
#include <algorithm>

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Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.

Functions
template<uint32 SYMBOL_SIZE, bool BIG_ENDIAN, typename storage_type , typename offsets_iterator >
void	nvbio::bwte (const ConcatenatedStringSet< PackedStream< storage_type, uint8, SYMBOL_SIZE, BIG_ENDIAN, typename std::iterator_traits< offsets_iterator >::value_type >, offsets_iterator > string_set, PagedText< SYMBOL_SIZE, BIG_ENDIAN > &BWT_ext, SparseSymbolSet &BWT_ext_dollars, BWTParams *params=NULL)