checksums.h File Reference

#include <nvBowtie/bowtie2/cuda/defs.h>
#include <nvBowtie/bowtie2/cuda/seed_hit_deque_array.h>
#include <nvbio/basic/types.h>
#include <crc/crc.h>
#include <thrust/device_vector.h>
#include <thrust/sort.h>

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Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::bowtie2
	nvbio::bowtie2::cuda

Functions
template<typename Iterator >
uint64	nvbio::bowtie2::cuda::device_checksum (Iterator begin, Iterator end)
void	nvbio::bowtie2::cuda::hits_checksum (const uint32 n_reads, SeedHitDequeArray &hit_deques, uint64 &crc, uint64 &sum)