ed_inl.h File Reference

#include <nvbio/alignment/sink.h>
#include <nvbio/alignment/utils.h>
#include <nvbio/alignment/alignment_base_inl.h>
#include <nvbio/alignment/sw/sw_inl.h>
#include <nvbio/alignment/ed/ed_utils.h>

Go to the source code of this file.

Classes
struct	nvbio::aln::priv::alignment_score_dispatch< EditDistanceAligner< TYPE, algorithm_tag >, pattern_string, qual_string, text_string, column_type >
struct	nvbio::aln::priv::alignment_checkpointed_dispatch< CHECKPOINTS, EditDistanceAligner< TYPE >, pattern_string, qual_string, text_string, column_type >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::aln
	nvbio::aln::priv

Functions
template<uint32 CHECKPOINTS, AlignmentType TYPE, typename checkpoint_type , typename submatrix_type , typename backtracer_type >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::aln::priv::alignment_traceback (const EditDistanceAligner< TYPE > aligner, checkpoint_type checkpoints, const uint32 checkpoint_id, submatrix_type submatrix, const uint32 submatrix_width, const uint32 submatrix_height, uint8 &state, uint2 &sink, backtracer_type &backtracer)