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NVBIO
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NVBIO
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#include <nvbio/basic/cuda/arch.h>#include <nvbio/basic/cuda/scan.h>#include <nvbio/alignment/sink.h>#include <nvbio/alignment/utils.h>#include <nvbio/alignment/warp_utils.h>#include <nvbio/alignment/alignment_base_inl.h>Go to the source code of this file.
Namespaces | |
| nvbio | |
| Define a vector_view POD type and plain_view() for std::vector. | |
| nvbio::aln | |
| nvbio::aln::priv | |
Functions | |
| template<uint32 BLOCKDIM, AlignmentType TYPE, typename scoring_type , typename string_type , typename qual_type , typename ref_type , typename column_type > | |
| NVBIO_FORCEINLINE NVBIO_DEVICE int32 | nvbio::aln::priv::gotoh_alignment_score (const scoring_type &scoring, const string_type str, const qual_type quals, const ref_type ref, const int32 min_score, uint2 *sink, column_type temp) |
| template<uint32 BLOCKDIM, AlignmentType TYPE, typename scoring_type , typename pattern_string , typename qual_string , typename text_string , typename column_type > | |
| NVBIO_FORCEINLINE NVBIO_DEVICE int32 | nvbio::aln::priv::alignment_score (const GotohAligner< TYPE, scoring_type > aligner, const pattern_string pattern, const qual_string quals, const text_string text, const int32 min_score, uint2 *sink, column_type column) |
1.8.4