Detailed Description

This module defines a set of classes that represent the state of the various pipelines on the device. All their members are device-views - objects and arrays that can and should be dereferenced from device kernels only.

There are a few different classes, corresponding to different scoring and traceback pipelines:

BaseScoringPipelineState: the basic scoring pipeline class every scoring pipeline inherits from
BestApproxScoringPipelineState: the best-approximate scoring pipeline
TracebackPipelineState: the traceback pipeline

Classes
struct	nvbio::bowtie2::cuda::BaseScoringPipelineState< ScoringScheme >

struct	nvbio::bowtie2::cuda::BestApproxScoringPipelineState< ScoringScheme >

struct	nvbio::bowtie2::cuda::AllMappingPipelineState< ScoringScheme >

struct	nvbio::bowtie2::cuda::TracebackPipelineState< ScoringScheme >

Detailed Description

Classes