nvSSA

nvSSA is an application built on top of NVBIO to build the Sampled Suffix Arrays given a set of BWT files.

Given a BWT-based index generated with nvBWT (e.g. my-index.*), it will generate both the forward and reverse SSAs.
Note: this is not normally needed, as nvBWT does already output them.

*  ./nvSSA my-index
* 

will create the files:

*  my-index.sa
*  my-index.rsa
*