NVBIO
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Groups Pages
nvSSA

nvSSA is an application built on top of NVBIO to build the Sampled Suffix Arrays given a set of BWT files.
Given a BWT-based index generated with nvBWT (e.g. my-index.*), it will generate both the forward and reverse SSAs.
Note: this is not normally needed, as nvBWT does already output them.
*  ./nvSSA my-index
* 
will create the files:
*  my-index.sa
*  my-index.rsa
*