output_priv.h File Reference

#include <nvbio/io/output/output_types.h>
#include <nvbio/io/output/output_stats.h>
#include <nvbio/io/output/output_file.h>
#include <nvbio/io/output/output_batch.h>
#include <thrust/host_vector.h>
#include <thrust/device_vector.h>
#include <nvbio/basic/vector_array.h>
#include <nvbio/io/sequence/sequence.h>
#include <stdio.h>

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Classes
struct	nvbio::io::AlignmentData

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::io

Functions
AlignmentData	nvbio::io::get (HostOutputBatchSE &batch, const uint32 aln_id)
AlignmentData	nvbio::io::get_mate (HostOutputBatchPE &batch, const uint32 aln_id, const AlignmentMate mate)
AlignmentData	nvbio::io::get_anchor_mate (HostOutputBatchPE &batch, const uint32 aln_id)
AlignmentData	nvbio::io::get_opposite_mate (HostOutputBatchPE &batch, const uint32 aln_id)