output_utils.h File Reference

#include <nvbio/io/alignments.h>
#include <nvbio/basic/dna.h>

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Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::io

Functions
uint32	nvbio::io::compute_cigar_pos (const uint32 sink, const uint32 alignment)
template<typename vector_type >
uint32	nvbio::io::reference_cigar_length (const vector_type cigar, const uint32 cigar_len)
template<typename vector_type >
uint32	nvbio::io::count_symbols (const Cigar::Operation type, const vector_type cigar, const uint32 cigar_len)
template<typename vector_type >
void	nvbio::io::analyze_md_string (const vector_type mds, uint32 &n_mm, uint32 &n_gapo, uint32 &n_gape)