reduce_impl.h File Reference

#include <nvBowtie/bowtie2/cuda/defs.h>
#include <nvbio/io/alignments.h>
#include <nvBowtie/bowtie2/cuda/seed_hit.h>
#include <nvBowtie/bowtie2/cuda/params.h>
#include <nvbio/io/utils.h>
#include <nvbio/basic/exceptions.h>
#include <nvBowtie/bowtie2/cuda/reduce_inl.h>

Go to the source code of this file.

Classes
struct	nvbio::bowtie2::cuda::BaseScoringPipelineState< ScoringScheme >
struct	nvbio::bowtie2::cuda::BestApproxScoringPipelineState< ScoringScheme >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::bowtie2
	nvbio::bowtie2::cuda

Functions
template<typename ScoringScheme , typename ReduceContext >
void	nvbio::bowtie2::cuda::score_reduce_t (const ReduceContext context, const BestApproxScoringPipelineState< ScoringScheme > &pipeline, const ParamsPOD params)
template<typename ScoringScheme , typename ReduceContext >
void	nvbio::bowtie2::cuda::score_reduce_paired_t (const ReduceContext context, const BestApproxScoringPipelineState< ScoringScheme > &pipeline, const ParamsPOD params)