scoring_queues.h File Reference

#include <nvBowtie/bowtie2/cuda/defs.h>
#include <nvbio/basic/cuda/pingpong_queues.h>
#include <nvbio/basic/cuda/arch.h>
#include <nvbio/basic/thrust_view.h>
#include <algorithm>
#include <nvBowtie/bowtie2/cuda/scoring_queues_inl.h>

Go to the source code of this file.

Classes
struct	nvbio::bowtie2::cuda::HitReference< HitQueuesType >
struct	nvbio::bowtie2::cuda::ReadHitReference< ScoringQueuesType >
struct	nvbio::bowtie2::cuda::ReadHitBinder< ScoringQueuesType >
struct	nvbio::bowtie2::cuda::ReadHitsIndex
struct	nvbio::bowtie2::cuda::ReadHitsIndexDeviceView
struct	nvbio::bowtie2::cuda::ReadHitsIndexDeviceView::HitArray
struct	nvbio::bowtie2::cuda::HitQueues
struct	nvbio::bowtie2::cuda::HitQueuesDeviceView
struct	nvbio::bowtie2::cuda::ScoringQueues
struct	nvbio::bowtie2::cuda::ScoringQueuesDeviceView
struct	nvbio::bowtie2::cuda::HitReference< HitQueuesType >
struct	nvbio::bowtie2::cuda::ReadHitsReference< ScoringQueuesType >
struct	nvbio::bowtie2::cuda::ReadHitsBinder< ScoringQueuesType >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::bowtie2
	nvbio::bowtie2::cuda

Functions
bowtie2::cuda::ScoringQueuesDeviceView	nvbio::device_view (bowtie2::cuda::ScoringQueues &queues)
bowtie2::cuda::HitQueuesDeviceView	nvbio::device_view (bowtie2::cuda::HitQueues &queues)
bowtie2::cuda::ReadHitsIndexDeviceView	nvbio::device_view (bowtie2::cuda::ReadHitsIndex &index)