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scoring_queues.h File Reference
#include <nvBowtie/bowtie2/cuda/defs.h>
#include <nvbio/basic/cuda/pingpong_queues.h>
#include <nvbio/basic/cuda/arch.h>
#include <nvbio/basic/thrust_view.h>
#include <algorithm>
#include <nvBowtie/bowtie2/cuda/scoring_queues_inl.h>

Go to the source code of this file.

Classes

struct  nvbio::bowtie2::cuda::HitReference< HitQueuesType >
 
struct  nvbio::bowtie2::cuda::ReadHitReference< ScoringQueuesType >
 
struct  nvbio::bowtie2::cuda::ReadHitBinder< ScoringQueuesType >
 
struct  nvbio::bowtie2::cuda::ReadHitsIndex
 
struct  nvbio::bowtie2::cuda::ReadHitsIndexDeviceView
 
struct  nvbio::bowtie2::cuda::ReadHitsIndexDeviceView::HitArray
 
struct  nvbio::bowtie2::cuda::HitQueues
 
struct  nvbio::bowtie2::cuda::HitQueuesDeviceView
 
struct  nvbio::bowtie2::cuda::ScoringQueues
 
struct  nvbio::bowtie2::cuda::ScoringQueuesDeviceView
 
struct  nvbio::bowtie2::cuda::HitReference< HitQueuesType >
 
struct  nvbio::bowtie2::cuda::ReadHitsReference< ScoringQueuesType >
 
struct  nvbio::bowtie2::cuda::ReadHitsBinder< ScoringQueuesType >
 

Namespaces

 nvbio
 Define a vector_view POD type and plain_view() for std::vector.
 
 nvbio::bowtie2
 
 nvbio::bowtie2::cuda
 

Functions

bowtie2::cuda::ScoringQueuesDeviceView nvbio::device_view (bowtie2::cuda::ScoringQueues &queues)
 
bowtie2::cuda::HitQueuesDeviceView nvbio::device_view (bowtie2::cuda::HitQueues &queues)
 
bowtie2::cuda::ReadHitsIndexDeviceView nvbio::device_view (bowtie2::cuda::ReadHitsIndex &index)