sequence_pac.cpp File Reference

#include <nvbio/io/sequence/sequence.h>
#include <nvbio/io/sequence/sequence_mmap.h>
#include <nvbio/basic/bnt.h>
#include <nvbio/basic/console.h>
#include <stdio.h>
#include <stdlib.h>

Go to the source code of this file.

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::io

Functions
bool	nvbio::io::is_pac_archive (const char *sequence_file_name)
bool	nvbio::io::load_pac (const Alphabet alphabet, SequenceDataHost *sequence_data, const char *prefix, const SequenceFlags load_flags, const QualityEncoding qualities)
bool	nvbio::io::load_pac (const Alphabet alphabet, SequenceDataMMAPServer *sequence_data, const char *prefix, const char *mapped_name, const SequenceFlags load_flags, const QualityEncoding qualities)

Variable Documentation

IndexVector* m_index_vec

Definition at line 237 of file sequence_pac.cpp.

SequenceDataInfo m_info

Definition at line 234 of file sequence_pac.cpp.

IndexVector* m_name_index_vec

Definition at line 236 of file sequence_pac.cpp.

StringVector* m_name_vec

Definition at line 235 of file sequence_pac.cpp.