ssa.h File Reference

#include <nvbio/basic/types.h>
#include <nvbio/basic/popcount.h>
#include <nvbio/basic/cuda/arch.h>
#include <nvbio/basic/cuda/ldg.h>
#include <vector_types.h>
#include <vector_functions.h>
#include <cuda_runtime.h>
#include <vector>
#include <stdexcept>
#include <thrust/device_vector.h>
#include <nvbio/fmindex/ssa_inl.h>

Go to the source code of this file.

Classes
struct	nvbio::SSA_index_multiple_device< K, index_type >
struct	nvbio::SSA_value_multiple_context< SSAIterator, BitmaskIterator, BlockIterator >
struct	nvbio::SSA_value_multiple
struct	nvbio::SSA_value_multiple_device
struct	nvbio::SSA_index_multiple_context< K, Iterator >
struct	nvbio::SSA_index_multiple< K, index_type >
struct	nvbio::SSA_index_multiple_device< K, index_type >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.

Functions
SSA_value_multiple::plain_view_type	nvbio::plain_view (const SSA_value_multiple &vec)
SSA_value_multiple_device::plain_view_type	nvbio::plain_view (const SSA_value_multiple_device &vec)
template<uint32 K, typename index_type >
SSA_index_multiple< K, index_type >::plain_view_type	nvbio::plain_view (const SSA_index_multiple< K, index_type > &vec)