do_process(const uint32 n_suffixes, const bwt_iterator bwt) | nvbio::HostBWTHandler< PackedStream< word_type *, uint8, SYMBOL_SIZE, BIG_ENDIAN, uint64 > > | inline |
HostBWTHandler(OutputIterator _output) | nvbio::HostBWTHandler< PackedStream< word_type *, uint8, SYMBOL_SIZE, BIG_ENDIAN, uint64 > > | inline |
offset | nvbio::HostBWTHandler< PackedStream< word_type *, uint8, SYMBOL_SIZE, BIG_ENDIAN, uint64 > > | |
output | nvbio::HostBWTHandler< PackedStream< word_type *, uint8, SYMBOL_SIZE, BIG_ENDIAN, uint64 > > | |
OutputIterator typedef | nvbio::HostBWTHandler< PackedStream< word_type *, uint8, SYMBOL_SIZE, BIG_ENDIAN, uint64 > > | |
process(const uint32 n_suffixes, const uint32 bits_per_symbol, const uint32 *bwt, const uint32 n_dollars, const uint64 *dollar_pos, const uint64 *dollar_ids) | nvbio::HostBWTHandler< PackedStream< word_type *, uint8, SYMBOL_SIZE, BIG_ENDIAN, uint64 > > | inlinevirtual |
process(const uint32 n_suffixes, const uint8 *bwt, const uint32 n_dollars, const uint64 *dollar_pos, const uint64 *dollar_ids) | nvbio::HostBWTHandler< PackedStream< word_type *, uint8, SYMBOL_SIZE, BIG_ENDIAN, uint64 > > | inlinevirtual |
SYMBOLS_PER_WORD | nvbio::HostBWTHandler< PackedStream< word_type *, uint8, SYMBOL_SIZE, BIG_ENDIAN, uint64 > > | static |
WORD_SIZE | nvbio::HostBWTHandler< PackedStream< word_type *, uint8, SYMBOL_SIZE, BIG_ENDIAN, uint64 > > | static |
~SetBWTHandler() | nvbio::SetBWTHandler | inlinevirtual |