This is the complete list of members for nvbio::aln::BandedScoreUnit< BAND_LEN, stream_type >, including all inherited members.

aligner_type typedef	nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
cell_type typedef	nvbio::aln::BandedScoreUnit< BAND_LEN, stream_type >
checkpoint_type typedef	nvbio::aln::BandedScoreUnit< BAND_LEN, stream_type >
column_type typedef	nvbio::aln::BandedScoreUnit< BAND_LEN, stream_type >
context	nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
context_type typedef	nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
execute(const ScoreStream< stream_type > &score_stream, const uint32 queue_slot, const pattern_string pattern, const qual_string quals, const text_string text, const int32 min_score, const uint32 window_begin, const uint32 window_end, sink_type &sink)	nvbio::aln::BandedScoreUnit< BAND_LEN, stream_type >	inline
job_id	nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
queue_slot	nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
run(const ScoreStream< stream_type > &score_stream)	nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >	inline
setup(const uint32 _job_id, const uint32 _queue_slot, const stream_type &stream)	nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >	inline
strings	nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
strings_type typedef	nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
valid	nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
window_begin	nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
WINDOW_SIZE	nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >	static