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nvbio::aln::BandedScoreUnit< BAND_LEN, stream_type > Member List

This is the complete list of members for nvbio::aln::BandedScoreUnit< BAND_LEN, stream_type >, including all inherited members.

aligner_type typedefnvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
cell_type typedefnvbio::aln::BandedScoreUnit< BAND_LEN, stream_type >
checkpoint_type typedefnvbio::aln::BandedScoreUnit< BAND_LEN, stream_type >
column_type typedefnvbio::aln::BandedScoreUnit< BAND_LEN, stream_type >
contextnvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
context_type typedefnvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
execute(const ScoreStream< stream_type > &score_stream, const uint32 queue_slot, const pattern_string pattern, const qual_string quals, const text_string text, const int32 min_score, const uint32 window_begin, const uint32 window_end, sink_type &sink)nvbio::aln::BandedScoreUnit< BAND_LEN, stream_type >inline
job_idnvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
queue_slotnvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
run(const ScoreStream< stream_type > &score_stream)nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >inline
setup(const uint32 _job_id, const uint32 _queue_slot, const stream_type &stream)nvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >inline
stringsnvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
strings_type typedefnvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
validnvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
window_beginnvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >
WINDOW_SIZEnvbio::aln::StagedAlignmentUnitBase< stream_type, derived_type >static