This is the complete list of members for nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >, including all inherited members.

aligner() const	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >	inline
aligner_type typedef	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
AlignmentStream(aligner_type _aligner, const uint32 _count, const pattern_set_type _patterns, const qualities_set_type _quals, const text_set_type _texts, sink_iterator _sinks, const uint32 _max_pattern_length, const uint32 _max_text_length)	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >	inline
init_context(const uint32 i, context_type *context) const	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >	inline
input_pattern_string typedef	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
input_text_string typedef	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
load_strings(const uint32 i, const uint32 window_begin, const uint32 window_end, const context_type context, strings_type strings) const	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >	inline
m_aligner	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
m_count	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
m_max_pattern_length	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
m_max_text_length	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
m_patterns	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
m_quals	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
m_sinks	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
m_texts	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
max_pattern_length() const	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >	inline
max_text_length() const	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >	inline
output(const uint32 i, const context_type *context) const	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >	inline
pattern_length(const uint32 i, context_type *context) const	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >	inline
pattern_prefetcher_type typedef	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
pattern_string typedef	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
quals_string typedef	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
sink_type typedef	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
size() const	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >	inline
text_length(const uint32 i, context_type *context) const	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >	inline
text_prefetcher_type typedef	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >
text_string typedef	nvbio::aln::priv::AlignmentStream< t_aligner_type, pattern_set_type, qualities_set_type, text_set_type, sink_iterator >