| bwt() const | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | inline |
| bwt_type typedef | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | |
| count(const uint32 c) const | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | inline |
| fm_index() | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | inline |
| fm_index(const index_type length, const index_type primary, const L2_iterator L2, const TRankDictionary rank_dict, const TSuffixArray sa) | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | inline |
| index_type typedef | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | |
| inv_psi(const fm_index< TRankDictionary, TSuffixArray, TL2 > &fmi, const typename fm_index< TRankDictionary, TSuffixArray, TL2 >::index_type i) | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | related |
| L2(const uint32 c) const | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | inline |
| L2_iterator typedef | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | |
| length() const | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | inline |
| locate(const fm_index< TRankDictionary, TSuffixArray, TL2 > &fmi, const typename fm_index< TRankDictionary, TSuffixArray, TL2 >::index_type i) | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | related |
| locate_ssa_iterator(const fm_index< TRankDictionary, TSuffixArray, TL2 > &fmi, const typename fm_index< TRankDictionary, TSuffixArray, TL2 >::index_type i) | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | related |
| lookup_ssa_iterator(const fm_index< TRankDictionary, TSuffixArray, TL2 > &fmi, const typename fm_index< TRankDictionary, TSuffixArray, TL2 >::range_type it) | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | related |
| m_L2 | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | |
| m_length | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | |
| m_primary | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | |
| m_rank_dict | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | |
| m_sa | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | |
| match(const fm_index< TRankDictionary, TSuffixArray, TL2 > &fmi, const Iterator pattern, const uint32 pattern_len) | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | related |
| match(const fm_index< TRankDictionary, TSuffixArray, TL2 > &fmi, const Iterator pattern, const uint32 pattern_len, const typename fm_index< TRankDictionary, TSuffixArray, TL2 >::range_type range) | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | related |
| match_reverse(const fm_index< TRankDictionary, TSuffixArray, TL2 > &fmi, const Iterator pattern, const uint32 pattern_len) | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | related |
| primary() const | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | inline |
| range_type typedef | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | |
| rank(const fm_index< TRankDictionary, TSuffixArray, TL2 > &fmi, typename fm_index< TRankDictionary, TSuffixArray, TL2 >::index_type k, uint8 c) | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | related |
| rank(const fm_index< TRankDictionary, TSuffixArray, TL2 > &fmi, typename fm_index< TRankDictionary, TSuffixArray, TL2 >::range_type range, uint8 c) | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | related |
| rank4(const fm_index< TRankDictionary, TSuffixArray, TL2 > &fmi, typename fm_index< TRankDictionary, TSuffixArray, TL2 >::index_type k) | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | related |
| rank4(const fm_index< TRankDictionary, TSuffixArray, TL2 > &fmi, typename fm_index< TRankDictionary, TSuffixArray, TL2 >::range_type range, typename TRankDictionary::vec4_type *outl, typename TRankDictionary::vec4_type *outh) | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | related |
| rank_dict() const | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | inline |
| rank_dictionary_type typedef | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | |
| sa() const | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | inline |
| suffix_array_type typedef | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | |
| symbol_count() const | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | inline |
| symbol_size() const | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | inline |
| vector_type typedef | nvbio::fm_index< TRankDictionary, TSuffixArray, TL2 > | |
1.8.4