nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT > Member List

This is the complete list of members for nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >, including all inherited members.

avg_sequence_len() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
bps() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
get_name(const uint32 i) const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
get_quals(const uint32 i) const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
get_range(const uint32 i) const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
get_read(const uint32 i) const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
index_iterator typedef	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
m_data	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
max_sequence_len() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
min_sequence_len() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
name_index() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
name_storage_iterator typedef	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
name_stream() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
name_stream_len() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
name_string typedef	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
name_string_set() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
name_string_set_type typedef	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
qual_storage_iterator typedef	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
qual_stream() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
qual_string typedef	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
qual_string_set() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
qual_string_set_type typedef	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
SEQUENCE_ALPHABET	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	static
SEQUENCE_BIG_ENDIAN	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	static
SEQUENCE_BITS	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	static
sequence_index() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
sequence_reference typedef	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
sequence_storage() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
sequence_storage_iterator typedef	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
sequence_stream() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
sequence_stream_type typedef	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
sequence_string typedef	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
sequence_string_set() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
sequence_string_set_type typedef	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >
SEQUENCE_SYMBOLS_PER_WORD	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	static
SequenceDataAccess(const SequenceDataT &data)	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
size() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline
words() const	nvbio::io::SequenceDataAccess< SEQUENCE_ALPHABET_T, SequenceDataT >	inline