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nvbio::io::SequenceDataInputStream Member List

This is the complete list of members for nvbio::io::SequenceDataInputStream, including all inherited members.

append(const Alphabet alphabet, SequenceDataHost *data, SequenceDataInputStream *stream, const uint32 batch_size, const uint32 batch_bps=uint32(-1))nvbio::io::SequenceDataInputStreamrelated
is_ok()=0nvbio::io::SequenceDataInputStreampure virtual
next(struct SequenceDataEncoder *encoder, const uint32 batch_size, const uint32 batch_bps=uint32(-1))=0nvbio::io::SequenceDataInputStreampure virtual
next(const Alphabet alphabet, SequenceDataHost *data, SequenceDataInputStream *stream, const uint32 batch_size, const uint32 batch_bps=uint32(-1))nvbio::io::SequenceDataInputStreamrelated
open_sequence_file(const char *sequence_file_name, const QualityEncoding qualities=Phred33, const uint32 max_seqs=uint32(-1), const uint32 max_sequence_len=uint32(-1), const SequenceEncoding flags=FORWARD, const uint32 trim3=0, const uint32 trim5=0)nvbio::io::SequenceDataInputStreamrelated
rewind()=0nvbio::io::SequenceDataInputStreampure virtual
skip(SequenceDataInputStream *stream, const uint32 batch_size)nvbio::io::SequenceDataInputStreamrelated
~SequenceDataInputStream()nvbio::io::SequenceDataInputStreaminlinevirtual
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