nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator > Member List

This is the complete list of members for nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >, including all inherited members.

alphabet() const	nvbio::io::SequenceDataInfo	inline
avg_sequence_len() const	nvbio::io::SequenceDataInfo	inline
bps() const	nvbio::io::SequenceDataInfo	inline
const_index_iterator typedef	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
const_name_storage_iterator typedef	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
const_qual_storage_iterator typedef	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
const_sequence_storage_iterator typedef	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
get_range(const uint32 i) const	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
has_qualities() const	nvbio::io::SequenceDataInfo	inline
index_iterator typedef	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
m_alphabet	nvbio::io::SequenceDataInfo
m_avg_sequence_len	nvbio::io::SequenceDataInfo
m_has_qualities	nvbio::io::SequenceDataInfo
m_max_sequence_len	nvbio::io::SequenceDataInfo
m_min_sequence_len	nvbio::io::SequenceDataInfo
m_n_seqs	nvbio::io::SequenceDataInfo
m_name_index	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
m_name_stream	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
m_name_stream_len	nvbio::io::SequenceDataInfo
m_qual_stream	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
m_sequence_index	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
m_sequence_stream	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
m_sequence_stream_len	nvbio::io::SequenceDataInfo
m_sequence_stream_words	nvbio::io::SequenceDataInfo
max_sequence_len() const	nvbio::io::SequenceDataInfo	inline
min_sequence_len() const	nvbio::io::SequenceDataInfo	inline
name_index()	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
name_index() const	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
name_storage_iterator typedef	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
name_stream()	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
name_stream() const	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
name_stream_len() const	nvbio::io::SequenceDataInfo	inline
operator=(const SequenceDataViewCore< InIndexIterator, InSequenceIterator, InQualIterator, InNameIterator > &in)	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
qs() const	nvbio::io::SequenceDataInfo	inline
qual_storage_iterator typedef	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
qual_stream()	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
qual_stream() const	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
sequence_index()	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
sequence_index() const	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
sequence_storage()	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
sequence_storage() const	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
sequence_storage_iterator typedef	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >
SequenceDataInfo()	nvbio::io::SequenceDataInfo	inline
SequenceDataViewCore()	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
SequenceDataViewCore(const SequenceDataInfo &info, const SequenceStorageIterator sequence_stream, const IndexIterator sequence_index, const QualStorageIterator qual_stream, const NameStorageIterator name_stream, const IndexIterator name_index)	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
SequenceDataViewCore(const SequenceDataViewCore< InIndexIterator, InSequenceIterator, InQualIterator, InNameIterator > &in)	nvbio::io::SequenceDataViewCore< IndexIterator, SequenceStorageIterator, QualStorageIterator, NameStorageIterator >	inline
size() const	nvbio::io::SequenceDataInfo	inline
words() const	nvbio::io::SequenceDataInfo	inline