| allocated_device_memory() const | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
| allocated_host_memory() const | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
| bwt(const uint32 n_suffixes, const uint32 *d_indices, uint8 *h_bwt, uint8 *d_bwt) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
| d_suffixes | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | |
| d_symbols | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | |
| DeviceStringSetRadices() | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
| DeviceStringSetRadices(const string_set_type string_set) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
| dollar_bwt(const uint32 begin, const uint32 end, uint8 *h_bwt) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
| extract(const uint32 n_indices, const uint32 *d_indices, const uint32 word_idx, const uint32 word_block_begin, const uint32 word_block_end, uint32 *d_radices) const | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
| init(const uint32 n_suffixes, const uint2 *_h_suffixes, const uint2 *_d_suffixes) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
| init_slice(const uint32 n_indices, const uint32 *d_indices, const uint32 word_block_begin, const uint32 word_block_end) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
| m_string_set | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | |
| needed_device_memory(const uint32 n_suffixes) const | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
| num_words(const uint32 max_string_len) const | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
| reserve(const uint32 n_suffixes, const uint32 slice_size) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |
| set(const string_set_type string_set) | nvbio::priv::DeviceStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > | inline |