nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS > Member List

This is the complete list of members for nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >, including all inherited members.

allocated_device_memory() const	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >	inline
allocated_host_memory() const	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >	inline
bwt(const uint32 n_suffixes, const uint32 *d_indices, uint8 *h_bwt, uint8 *d_bwt)	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >	inline
d_active_suffixes	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >
d_suffixes	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >
d_symbols	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >
dollar_bwt(const uint32 begin, const uint32 end, uint8 *h_bwt)	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >	inline
extract(const uint32 n_indices, const uint32 *d_indices, const uint32 word_idx, const uint32 word_block_begin, const uint32 word_block_end, uint32 *d_radices) const	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >	inline
h_active_suffixes	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >
h_symbols	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >
HostStringSetRadices(const string_set_type string_set)	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >	inline
init(const uint32 n_suffixes, const uint2 *_h_suffixes, const uint2 *_d_suffixes)	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >	inline
init_slice(const uint32 n_indices, const uint32 *d_indices, const uint32 word_block_begin, const uint32 word_block_end)	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >	inline
m_block	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >
m_string_set	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >
m_suffixes	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >
needed_device_memory(const uint32 n_suffixes) const	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >	inline
num_words(const uint32 max_string_len) const	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >	inline
reserve(const uint32 n_suffixes, const uint32 block_size)	nvbio::priv::HostStringSetRadices< string_set_type, SYMBOL_SIZE, DOLLAR_BITS, WORD_BITS >	inline